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Does anything say autumn like Gluten Free Apple Muffins? With chunks of juicy apple, a delicious crumb topping and warming cinnamon spice, these are the epitome of Fall. These easy Apple and Cinnamon Muffins are perfect for lunchboxes and deliciously gluten free!

Gluten free apple muffins on a baking tray.

The Best Apple Muffins with Streusel Topping

A tray of gluten free apple muffins surrounded by apples and hazelnuts.
  • Why choose this recipe? Don’t be put off by the fact it looks like a lot of ingredients – it’s 1000% worth making the streusel topping for these apple muffins. They’re sweet and tangy with a warming cinnamon spice, no-one would know they’re gluten free!
  • Top Tip: If you love these muffins and want to make them on the regular, you can make extras of the streusel topping and freeze it, ready for next time.
  • Flour of choice: I always use the FREEE Plain Gluten Free Flour for this but any plain gluten free flour blend will work, such as Asda or M&S flour.
  • Anything else? If you’re a big apple fan or have a glut to use up, why not check out my Dorset Apple Cake, gluten free apple turnovers, gluten free apple pie or easy gluten free apple crumble next?
Close up of a gluten free apple muffin with a bite taken out.

Don’t just take my word for it…

Debra left ⭐️⭐️⭐️⭐️⭐️ and said: “These are delicious with the warm spices and the crumble top is a perfect twist. Love these. Thanks for sharing!

Liz also left a ⭐️⭐️⭐️⭐️⭐️ review and said: “These worked really well and tasted great. You definitely wouldn’t know they were gluten free.”

Ingredients and Substitutions

There’s a printable recipe card below for these gluten free apple muffins with the full quantities. But here are the main ingredients and ideas for any swaps.

  • Apple: I use Bramley apples but Granny Smith and Braeburn are good alternatives.
  • Butter: For dairy free use a vegan butter or dairy free baking spread.
  • Sugar: In the US look for superfine sugar or baker’s sugar.
  • Eggs
  • Natural Yoghurt: You can also use Greek yoghurt, or a dairy free yoghurt.
  • Milk: For dairy free use something like unsweetened almond milk.
  • Plain Gluten Free Flour: I usually use the FREEE Plain Gluten Free Flour but this should work with any plain (or GF all purpose flour) gluten free flour blend. Ensure you use a flour blend, not a single flour like almond flour or coconut flour.
  • Raising Agents: I use a mixture of baking powder and bicarbonate of soda (also called baking soda in the US) for the rise. Just check you’re using gluten free baking powder.
  • Xanthan Gum: You can omit this if your flour blend already has it.
  • Cinnamon: Usually spices are gluten free but always double check as some have a ‘may contain’ warning due to manufacturing methods.
Ingredients for gluten free apple muffins with text labels.

How to Make Gluten Free Apple Muffins

There’s a printable recipe card below with the method. But here are some step-by-step photos to show you how easy these apple streusel muffins are to make.

Chopped apples mixed with cinnamon and sugar in a bowl.
Step 1: Mix the chunks of apple with the cinnamon and brown sugar.
The apple muffin streusel topping in a mixing bowl.
Step 2: Rub the crumb topping ingredients together with your fingers.
Mix together the wet ingredients for the apple muffins.
Step 3: Mix together the wet ingredients for the apple muffins.
Sift the dry ingredients into the wet and mix together to form the muffin batter.
Step 4: Sift the dry ingredients into the wet and mix together to form the muffin batter.
Stir the apple chunks into the muffin batter.
Step 5: Stir the apple chunks into the muffin batter.
Divide the batter between the muffin cases and top with the crumble.
Step 6: Divide the batter between the muffin cases and top with the crumble.

Storing and Freezing Instructions

TO STORE: These cinnamon apple crumb muffins will keep in an airtight container for 2-3 days. I recommend keeping them at room temperature, rather than the fridge.

TO FREEZE: If you want, you can also freeze these muffins in a tub or bag for up to 6 months. Simply defrost at room temperature and eat when you fancy one!

Close up of a gluten free apple muffin.

More Gluten Free Muffin Recipes

If you like this Gluten Free Apple Crumble Muffins recipe then make sure you check out these other gluten free muffin recipes too…

Have you tried this recipe?

I have a huge favour to ask! It’s getting more and more difficult to get my recipes out there to the world – so if you try this and love it, it would mean a HUGE amount if you’d come back and leave a ⭐️⭐️⭐️⭐️⭐️ review and a little comment telling me what you thought! Just 30 seconds of your time would be such a huge support! 💛

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Gluten free apple muffins on a baking tray.
5 from 5 votes

Gluten Free Apple Muffins Recipe

Jumbo gluten free Apple Muffins with chunks of sweet apple, warming cinnamon flavours and a delicious cinnamon crumble topping. Perfect for lunchboxes and Fall baking days.
Prep: 10 minutes
Cook: 18 minutes
Total: 28 minutes
Servings: 12 muffins

Equipment

Ingredients 

For the muffins:

  • 100 g unsalted butter, (softened)
  • 175 g caster sugar
  • 2 large eggs
  • 150 g natural yoghurt, (I used full fat)
  • 1 tsp ground cinnamon
  • 2 tbsp milk
  • 250 g plain gluten free flour, (plus 1-2 tsp extra for the blueberries)
  • 3 tsp baking powder
  • 1 tsp bicarbonate of soda
  • 1/4 tsp xanthan gum

For the apples:

  • 350 g Bramley apple, (approx 1 large apple)
  • 1 tsp light brown sugar
  • 1 tbsp plain gluten free flour
  • 1/2 tsp ground cinnamon

For the crumble topping:

  • 30 g butter, (melted)
  • 30 g light brown sugar
  • 60 g plain gluten free flour
  • 0.5 tsp ground cinnamon

Instructions 

Prepare the apple:

  • Peel and core the apple, then cut into 1cm chunks. Add to a bowl with the brown sugar, gluten free flour and cinnamon and mix well. Set to one side.

Make the crumble topping:

  • Add the gluten free flour, cinnamon and sugar to a bowl and mix well. Pour in the melted butter and mix with a fork – use your fingers if necessary to keep a rough, breadcrumb-like texture. Set to one side.

To make the muffins:

  • Preheat the oven to 200'C / Fan 180C / Gas Mark 6 and place 12 tulip muffin cases in a 12-hole muffin tin.
  • In a large mixing bowl, cream the butter and sugar together with an electric whisk until pale and fluffy. Add the eggs, yoghurt and milk and mix again until combined.
  • Sift in the flour, cinnamon, baking powder, bicarbonate of soda and xanthan gum. Fold in using a wooden spoon or spatula until combined.
  • Add the apple chunks and fold in until just combined. Spoon the mixture evenly between the 12 muffin cases, then sprinkle the crumble topping over the top.
  • Place the muffins in the oven. Bake for 5 minutes and then turn the temperature down to 180'C / Fan 160C / Gas Mark 4. Bake for a further 15-18 minutes and remove from the oven. They should be golden on top and a skewer in the centre should come out clean.
  • Cool on a cooling rack before eating. Will keep in an airtight container for 2-3 days after baking, but best served slightly warm from the oven.

Notes

  • Storing: These muffins can be stored in an airtight container at room temperature or frozen and then defrosted when you have a cake craving.
  • Weighing Scales vs Cups: You can toggle this recipe card to convert the ingredients into cups. However, I always recommend using weighing scales – these are cheap to buy and much more accurate. And in gluten free baking, a tiny variation can make a huge difference!
  • Step-by-Step Photos: Check out the blog post above for step-by-step photos to guide you through how this gluten free muffins recipe should look at each stage.
  • Like this Recipe? It would mean SO much to me if you could leave a 5* rating and leave a short review about these Gluten Free Apple Muffins! It really helps support my blog and get my recipes out there to more gluten free people. Thank you! xx

Nutrition

Serving: 12muffins | Calories: 259kcal | Carbohydrates: 40g | Protein: 4g | Fat: 11g
Like this recipe? Rate and comment below!
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About Sarah Howells

Hi, I'm Sarah! Diagnosed with coeliac disease 20 years ago, I'm on a mission to create the best gluten free recipes since sliced bread. No fruit salads or dry brownies here.

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